Repbase Reports |
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| 2009, Volume 9, Issue 1 |
| January 31, 2009 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 47 |
CR1-J1_Pass |
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CR1 Non-LTR Retrotransposon from Passeriformes. |
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Submitted: 08-Jan-2009 |
Accepted: 31-Jan-2009 |
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Key Words: CR1; Non-LTR Retrotransposon; Transposable Element; CR1-J1_Pass; LINE |
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Source: Passeriformes |
Organism: Passeriformes |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae |
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| [1] |
Authors: Smit,A.F. |
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Title: CR1-J1_Pass - CR1 Non-LTR Retrotransposon from Passeriformes. |
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Journal: Repbase Reports 9(1), 47-47 (2009) |
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Abstract: 20% subst. Starts at pos ~250. gag 2-1045 (almost complete), pol 1030-3903, encoding proteins 60%/71% and 76%/85% identical/similar to the CR1-F encoded gag and pol proteins, respectively. Majority of copies (2 of 3) have one C at pos 3336-7 and one G at pos 3356-7 AG, causing a frameshift in the pol gene. While the pol ORFs and proteins of CR1-J2 and CR1-J1 are very similar (92% from 1128 to end 3992), the gag region is only 20% similar, and the encoded proteins are distant from each other compared to gags from other subfamilies. One or the other is therefore the product of a recombination. Since Je seems to have a 170 bp insertion at the recombination point compared to this and other subfamilies, it forms the most likely candidate.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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