Repbase Reports |
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| 2008, Volume 8, Issue 2 |
| February 29, 2008 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 49 |
Chapaev3-1_OL |
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Chapaev3-1_OL is an autonomous DNA transposon - imperfect consensus. |
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Submitted: 29-Feb-2008 |
Accepted: 29-FEB-2008 |
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Key Words: Chapaev; DNA transposon; Transposable Element; Chapaev3; Chapaev3-1_OL |
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Source: Oryzias latipes |
Organism: Oryzias latipes |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei; Acanthomorpha; Acanthopterygii; Percomorpha; Atherinomorpha; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Chapaev3, a distinctive group of animal Chapaev transposons. |
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Journal: Repbase Reports 8(2), 49-49 (2008) |
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Abstract: Chapaev3-1_OL belongs to the Chapaev3 group of the Chapaev superfamily of DNA transposons (see comments on Chapaev3-1_PM). Chapaev3-1_OL is a family of fish Chapaev3 transposons: genomic copies of Chapae3-1_OL elements are ~95% identical to their consensus sequence, which was derived from multiple alignment of a fiew Chapaev3-1_OL elements. The transposase-encoding region (pos. 440-1800) is corrupted by mutations accumulated in these elements after their transposition. Chapaev3-1_OL contains 12-bp TIRs. The Chapaev3-1_OL DNA sequence (pos. 571-2062) is 78% identical to the lamprey Chapaev3-1_PM. This high identity indicates horizontal transfer of these transposons.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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