Repbase Reports |
|---|
| 2007, Volume 7, Issue 1 |
| January 31, 2007 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 3 |
CALYPSHAN_I_MT |
|||
|---|---|---|---|
Internal region sequence of LTR retroposon, CALYPSHAN_MT, from Medicago truncatula. |
|||
|
Submitted: 25-Jan-2007 |
Accepted: 31-Jan-2007 |
||
|
Key Words: Gypsy; LTR Retrotransposon; Interspersed Repeat; LTR; retroposon; ORF; Interspersed; aspertyl peptidase; CALYPSHAN_I_MT |
|||
|
Source: Medicago truncatula |
Organism: Medicago truncatula |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids; eurosids I; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago |
|
| [1] |
Authors: Shankar,R. and Jurka,J. |
||
|
Title: CALYPSHAN_MT: LTR retroposon from barrel medic. |
|||
|
Journal: Repbase Reports 7(1), 3-3 (2007) |
|||
Abstract: The internal region shows characteristic features of a Gypsy-like LTR retroposon with arrangement of domains in a pattern of gag-protease-RT polymerase-RNAse-Integrase. Two ORFs are present. In general the element is present in the genome with high copy number but most of them are incomplete or interrupted with just ~10 intact copies. The copy number, size of internal region and LTRs indicate that this element can belong to CALYPSO group of Gypsy-like retroposons.
|
|||
|
Derived: Positions 58822 70560 Accession No CT573400 EMBL/GenBank/DDBJ |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||