Repbase Reports |
|---|
| 2006, Volume 6, Issue 10 |
| October 31, 2006 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 543 |
X1_LINE |
|||
|---|---|---|---|
A fossil LINE element in mammals preserved from pre-mammalian era - consensus. |
|||
|
Submitted: 11-Jul-2006 |
Accepted: 02-AUG-2006 |
||
|
Key Words: Non-LTR Retrotransposon; Interspersed Repeat; conserved; X1_LINE |
|||
|
Source: Euteleostomi |
Organism: Euteleostomi |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata |
|
| [1] |
Authors: Jurka,J. |
||
|
Title: X1_LINE: An ancient LINE element present in mammals, birds and reptiles. |
|||
|
Journal: Repbase Reports 6(10), 543-543 (2006) |
|||
Abstract: This consensus was reconstructed from human DNA. This family was preserved since the pre-mammalian era and is present in >100 detectable copies phg. This sequence can be easily expanded by ~200 bp (not included). The 5' expansion is very purine-rich and resembles simple sequences. It matches thousands of genomic sites which are very non-evenly distributed over different chromosomes. Therefore it cannot be excluded that this LINE fragment is a part of a SINE-like element. The translated sequence matches CR1-like sequences from chicken and turtles, as well as HER1_ST LINE from sharks.
|
|||
|
Derived: [1] (Consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||