2005, Volume 5, Issue 6
June 30, 2005
Copyright © 2001-2007 - Genetic Information Research Institute, Mountain View, California
ISSN# 1534-830X
Page 142

HAT12_CB

HAT12_CB - a family of nonautonomous hAT-like transposons.

Submitted:
30-Jun-2005 		Accepted:
30-Jun-2005
Key Words:
hAT; DNA transposon; Interspersed Repeat; Non-autonomous; Cb000400
Source:
Caenorhabditis briggsae 		Organism:
Caenorhabditis briggsae 		Taxonomy:
Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
[2] Authors:
Pavlicek,A. and Jurka,J.
Title:
HAT12_CB - a family of nonautonomous hAT-like transposons.
Journal:
Repbase Reports 5(6), 142-142 (2005)
Abstract:
The consensus sequence was reconstructed from the Ensembl genome annotation. Copies are 87% identical to the consensus. HAT12_CB contains 14bp-long TIRs and is flanked by 8bp target duplications. Distantly similar to HAT11_CB and HAT1_CB. The internal part is similar to MARINER38C_CB.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Stein,L.D., Bao,Z., Blasiar,D., Blumenthal,T., Brent,M.R., Chen,N., Chinwalla,A., Clarke,L., Clee,C., Coghlan,A., Coulson,A., D'Eustachio,P., Fitch,D.H., Fulton,L.A., Fulton,R.E., Griffiths-Jones,S., Harris,T.W., Hillier,L.W., Kamath,R., Kuwabara,P.E., Mardis,E.R., Marra,M.A., Miner,T.L., Minx,P., Mullikin,J.C., Plumb,R.W., Rogers,J., Schein,J.E., Sohrmann,M., Spieth,J., Stajich,J.E., Wei,C., Willey,D., Wilson,R.K., Durbin,R. and Waterston,R.H.
    The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics.
    PLoS Biol 1(2), (2003)

© 2001-2008 - Genetic Information Research Institute