Repbase Reports
2005, Volume 5, Issue 11
November 30, 2005
Copyright © 2001-2008 - Genetic Information Research Institute, Mountain View, California
ISSN# 1534-830X
Page 371

ERV23_MD_I

ERV23_MD, young class 2 endogenous retrovirus from Monodelphis domestica - consensus of internal sequence.

Submitted:
14-Nov-2005 		Accepted:
30-Nov-2005
Key Words:
ERV2; Endogenous Retrovirus; Interspersed Repeat; integrase; reverse transcriptase; RNaseH; aspartyl protease; gag-pol
Source:
Monodelphis domestica 		Organism:
Monodelphis domestica 		Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
[2] Authors:
Gentles,A. and Jurka,J.
Title:
ERV23_MD, a young class 2 endogenous retrovirus from the opossum M. domestica.
Journal:
Repbase Reports 5(11), 371-371 (2005)
Abstract:
This appears to be a relatively young class 2 ERV that was active fairly recently; there are several complete copies that are highly similar (>98%) to the consensus. The ORFs are largely intact, but there are frameshifts in the consensus. The corresponding LTR is deposited as ERV23_MD_LTR. This consensus was reconstructed from the June 2005 release of the 6.8X WGS sequence.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. The Broad Institute of MIT and Harvard, Cambridge, MA, USA. Monodelphis domestica sequencing consortium
    Monodelphis domestica WGS sequence.
    Initial data release, version 2

© 2001-2012 - Genetic Information Research Institute