Repbase Reports
2004, Volume 4, Issue 9
September 30, 2004
Copyright © 2001-2008 - Genetic Information Research Institute, Mountain View, California
ISSN# 1534-830X
Page 231

GYPSY4-I_CB

Caenorhabditis briggsae family of LTR retrotransposons - a consensus.

Submitted:
00-Sep-2004 		Accepted:
30-Sep-2004
Key Words:
LTR; Gypsy clade; 4bp TSDs; Cb000510; GYPSY4-LTR_CB; GYPSY4-I_CB
Source:
consensus 		Organism:
Caenorhabditis briggsae 		Taxonomy:
Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria; Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
[2] Authors:
Pavlicek,A. and Jurka,J.
Title:
GYPSY4_CB - a family of nonautonomous LTR retrotransposons.
Journal:
Repbase Reports 4:(9) p.231 (2004)
Abstract:
The consensus sequence was reconstructed from the Ensemble genome annotation. Copies are ~95% identical to the consensus and flanked by 4bp target duplications. GYPSY4-LTR_CB is 76% similar to GYPSY3-LTR_CB. GYPSY4-I_CB thus appears to be a nonautonomous family related to GYPSY3_CB.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Stein,L.D., Bao,Z., Blasiar,D., Blumenthal,T., Brent,M.R., Chen,N., Chinwalla,A., Clarke,L., Clee,C., Coghlan,A., Coulson,A., D'Eustachio,P., Fitch,D.H., Fulton,L.A., Fulton,R.E., Griffiths-Jones,S., Harris,T.W., Hillier,L.W., Kamath,R., Kuwabara,P.E., Mardis,E.R., Marra,M.A., Miner,T.L., Minx,P., Mullikin,J.C., Plumb,R.W., Rogers,J., Schein,J.E., Sohrmann,M., Spieth,J., Stajich,J.E., Wei,C., Willey,D., Wilson,R.K., Durbin,R. and Waterston,R.H.
    The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics.
    PLoS Biol. 1(2), 166-192 (2003)

© 2001-2008 - Genetic Information Research Institute