Repbase Reports |
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| 2004, Volume 4, Issue 6 |
| June 30, 2004 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 186 |
Mirage1_CB |
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Mirage1_CB is a DNA transposon that belongs to the Mirage superfamily. |
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Submitted: 30-Jun-2004 |
Accepted: 30-Jun-2004 |
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Key Words: DNA transposon; Mirage superfamily; 2-bp TSDs; transposase; Mirage1_CB |
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Source: consensus |
Organism: Caenorhabditis briggsae |
Taxonomy: Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Mirage1_CB, an autonomous DNA transposon from the Caenorhabditis briggsae genome |
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Journal: Repbase Reports 4:(6) p. 186 (2004) |
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Abstract: Mirage1_CB is an autonomous DNA transposon that belongs to the Mirage superfamily detected previously in the C. elegans genome. The consensus sequences was reconstructed from several 99% identical copies. It contains 15-bp terminal inverted repeats and it encodes the 1039-aa Mirage1_CBp transposase (pos. 420-4479; 13 exons). This transposon is characterized by 2-bp target site duplications. MirageN1a_CB and MirageN1b_CB are nonautonomous transposons whose autonomous counterparts were relatives of Mirage1_CB. Mirage1_CBp: MPRTTHKEVRPFHGMGSNDTSSQERRVGEDDVPYAVKEMATLEDTSNVDFEMELEDMDKDEDTD EDDGGQTEFERLLTSQEDTFAEEARKLCNKCVDSATATFVRIGSRSQLKELVELYIDKIMEIRK QLKEGKNIVHNLNSPFFSKYWKAELQNHLNLSTVISIDGIQISGNKKKLWPVSLVLVDLPSSEM QKSCNLILEGAVECSENPSTLLWNAIFGKIRSDVEAHTGRVGTITYDCKITTCCADQPAKRSFF GMKGHSSSMSCFYCLSEETLYKRGGVSRKEQRYGNLTVLDSKNGENGFSSKSSKVVEVIAPYNT PIDILHNTGEGLFDRIRKAIPLFPEIFPPDTKFIRKSDLFVIDPSSFARDIRRVYLHSNYENIE NLRNGSDKTHVGDCKITVQNFRFQHLRLTLALTALVSDSMKPKARLVLIALGFLTNKMYSNTQA PTLFDIQLSAAAAWYLAEANKEYITMKTHELLYHLADVNKLFGNTGLLSTFSFESFYQFSLCGY STSITRFFLQNACTKFVHYFHFINPQPFNKFRFLLHTSLRREIVRRSKPLGTESLKRFLSLTPD LGSSHVTWDGRIRDVQKIDKENIPIESVLYSTMYLPLGSLISEYSSPQTNNDIVFASCKGRKTC FRFVAAVVTTSLVGALVEPIEAVSEDRKLMDLRKIRNSLSNADFYYYSEMVNQLINYEGLVEGS LSGRREVIPVDSILGVACYAMHYLTPNRSSRPAPYRLPLTTRTSPSTSSSSRLFVDENQRKHAR GTDYTRGNLYTATVNQKWSPIGFAATQLYDMETGSAFDRETCERNIEKMIKNDRDIDYMEWLNL ASKCREEGKDLLEKFSLGMATQTALSNARNRRAPRETKTVSNLVGNIEKRGFSLDSAKCFDEEL ELPSRKTFRLSDILTENVVCNWTSTQFDAHTKRLALHVWDAVDNADELLVCYGSSQKENKYVPV NPSIFTKMSGKITNQYVIKSAHTQTTSSRVLVKRTAKTEKPKNRVRARYNAKFGKSQSEQAAIW LHDELMKGEASELKS
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Derived: [1] (consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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