Repbase Reports |
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| 2004, Volume 4, Issue 12 |
| December 31, 2004 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 321 |
Gypsy8-I_DR |
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An internal portions of the Gypsy8_DR LTR retrotransposon - a consensus sequence. |
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Submitted: 00-Dec-2004 |
Accepted: 31-Dec-2004 |
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Key Words: LTR retrotransposon; endogenous retrovirus; Gypsy superfamily; gag; reverse transcriptase; integrase; Gypsy8_DR; Gypsy8-LTR_DR; Gypsy8-I_DR |
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Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Gypsy8_DR, an LTR retrotransposon from zebrafish |
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Journal: Repbase Reports 4:(12) p.321 (2004) |
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Abstract: Gypsy8-I_DR is an internal portion of the Gypsy8_DR LTR retrotransposon that belongs to the Gypsy superfamily. Its long terminal repeat is deposited in Repbase as Gypsy8-LTR_DR. Gypsy8_DR is characterized by 4-bp target site duplications. The internal portion encodes two proteins: the 622-aa gag-like Gypsy8_DR-1p (pos. 93-1958) and 1557-aa pol Gypsy8_DR-2p (pos. 1985-6655). The primer-binding site (PBS) is complementary to the Arg-tRNA. Gypsy8_DR-1p: MDVIEREDVKIENAVIISGLTLTETDEVVESYLLRFGSIRQNFLIDDPQSVFHHNAVVEFSHNS AICNIEPQLPLTIVSPTDMSVIFRIHKLSTAYSTATSSDTAKQLKSQEDKNVESQQDIIKQNSM KMNGVTHLDDASHREDCGLENLKSSTKVLTSVTNTPQRTGSFKPSALKIDNNNPAKVNMSTTSP HSLTEANSVSVRIPISSMHPPDIQRVIMEHVVKMSETVPQHSASFRLKAFSGRMPRPGNEPDFD TWRTSVDYLLNELSLSESHKMQKILDSLLPPASDVIKHVSPNAPASECLRLLESVYGSVEDGDE LLAKFINTLQDPGEKSSAYLHRLYVLLCTTIRRGGIAESERDRYLLKQFCRGCWDNALIVELQL ERIKADPLSFAELAVLLRTAEEKKTSKEERMRKHLGLGRPSPTPLKLRTITHQQSAHFNNSLEV DATNIPAFDNPKQKVSKQKSKTQCPETSEADALKKEIMALQSQITAIKTAADQEARERTEASEL QQLKGQIAELKVQLATSGAQRKQFQKSPQQSNNPSDFGVSRERNERQKNTELRTNRPRPWYCFR CGDDGHLAIYCENAPNPLRVEEKRQKLREKQAEWDLRNGGATVPLN Gypsy8_DR-2p: MGTKRKQSPNNQQALNKHTDTRNSLKLPAGLVGMKCTARVKIEEKEVNCLLDTGSQVTTVPMSF YNRYLSRHPMQPLNHLLEVEGANGQAVPYLGYVELTLKFPQEFLGSEAEVPTLALVVPDLTQTP QILIGTNTLDVLYAGHAQTVKPRVMSRYQGYQAVIRVLEARLQQAGVNVLGQVKVKGDMPEVIA AGSTVVLNGCVKVIGPLSETCVTIEPSVSSSLPGGLLVASSLHSLPAKRNVQIPIVLRNETQID LTIPPKAVLAEVHAVQSVIEGRKPVNASVSKVTNPAQNRIIPDFGDSPLSNDWKEKITDLVNSM QDVFALHDLDYGHTNKVKHHIHLSDSTPFKQRARPIHPQDVDAVRRHLKELLDANIIRESESSF ASPIVVVRKKNNDVRLCIDFRKLNSQTVKDAYALPNLEEAFSVLSGSKWFSVLDLKSGFYQIEM EEADKSKTAFVCPLGFYEFNRMPQGVTNAPSTFQRLMERCMGDLNRKDVLVFIDDLIVFSKTLE EHKAKLLQVLTRLKEYGLKLSPKKCKFFQTSVQYLGHIVSQNGVETDPTKIEALKTWPRPKNLK ELKSFLGFAGYYRRFVQDFSKITRPLNDLTIGYPPLQKNQKRNPTKSTPYLDPKEQFGERWNQD CQWAFNTIIEKLTSAPVLGYADPRLPYVLTTDASTVGLGAALYQEQEGRMRVIAFASRGLTKSE AKYPAHKLEFLALKWAVTAKFSDYLYGGEFTVITDSNPLTYILTSAKLDATSYRWLSSLSTFNF KIQYRAGKRNLDADGLSRRPHDEQIDDFASQKERERIKQFTLHHLAETEQQVILPDAVKALCER HQVYQSCGDSNLPYSQLTVVESLSQSVDAVPQEFQQEAGGLPVLPQMSEEELKECQRTDPVLEK VIRHLDSGKKPHGKVEPAEVALWLREWDRFEFKNGILFRKRQDPRGVLYQLALPKKLRGNVLKN LHNDMGHLGIERTLDLARARFYWPKMAITVEEKVKTCERCVKRKTPPERAAPLVNITTSRPLEL VCIDYLSLEPDRSNTKDILVITDHFTKYAVAVPTRNQKAETVAKCLWDNFFIHYGFPERILSDQ GPDFESRIIKELCGIAGIQKVRTTPYHPRGNPVERFNRTLLQMLGTLEDKQKTYWKDFVKPLVH AYNCTRNDTTGFSPYELMFGRQPRLPVDIAFGLPATGSSPSHSIYVRNLKDRLEESYRIATENA SKLARRNKKRFDERVVTSFLEVGDRVLVRNVKLRGKHKLADKWEKEIYVVLKKAGDLPVYTVSP EGRDGPLRTLHRDLLLPCGFLQESMPEPVKPKPPRRPRTRANTSAREPDTMTESSDSEDDSMDH YSRRHLPKVESRILFNPRHVKPSRDRPIAELSSKTRVVKSKINDCPAIEIPQENLPYLPEDENC PMSEPERENTPVMDSVRPDMLRNVPVVNDQELLEQRDELEILSEIDDEADQRNIHSGQAVIDQV ERNTLRRSQRHREPPQRLQYSQLGNPLSLVIQSLLQGLSTAVTASLEESDCPREASLLMQKMFP SAAVTQPKRCRGTCIDSRRGE
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Derived: [1] (consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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