Repbase Reports |
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| 2004, Volume 4, Issue 12 |
| December 31, 2004 |
| Copyright © 2001-2008 - Genetic Information Research Institute, Mountain View, California |
| ISSN# 1534-830X |
| Page 313 |
Gypsy10-I_DR |
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An internal portions of the Gypsy10_DR LTR retrotransposon - a consensus sequence. |
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Submitted: 00-Dec-2004 |
Accepted: 31-Dec-2004 |
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Key Words: LTR retrotransposon; endogenous retrovirus; Gypsy superfamily; gag; reverse transcriptase; integrase; Gypsy10_DR; Gypsy10-LTR_DR; Gypsy10-I_DR |
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Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Gypsy10_DR, an LTR retrotransposon from zebrafish |
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Journal: Repbase Reports 4:(12) p.313 (2004) |
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Abstract: Gypsy10-I_DR is an internal portion of the Gypsy10_DR LTR retrotransposon that belongs to the Gypsy superfamily. Its long terminal repeat is deposited in Repbase as Gypsy10-LTR_DR. Gypsy10_DR is characterized by 4-bp target site duplications. The internal portion encodes one 1988-aa polyprotein composed of gag, protease, reverse transcriptase, and integrase domains (pos. 142-6105). Gypsy10-I_DR1p: MSFRSDPQLQSELLEWCREAVIDPAHALLLTGVPQNTETACIEKVAESVKLFGRVRVRDSKGGA TPTTLLVLCECREVVDPTNCPEELHPTDGEEAWMIILATERESAHVAPAEFADKLSKFLKDEGK SMTDVHALFSPQSANPSSPESIIRAVGEILEKTVRPSSDGSAYRRLRTFSGIVPTPVGEETMDH WIEQAKLMISECECSEKEKRRRIVESLKGPALEIIKAVRMSCPDAEAVKYVEALESTFGSSESG EDLYFAFRLLRQCPGESLSAFLRRMEKSLTKVIQKGGLTSANADKARVEQLIRGAVESDMMLLQ LRLRERKENPPTFLSLLNEVREAEEIEATRRKITATAKPIHLQEESICPTVVHELKAEIQELRA QIKSDRSNIASSMMIENRVKSRQLSPTDSKEVVKETEVQVLKKQVQQLQQQLAIMSVGQSNSTS HAQLPQTPVSSSSRHQLSKPKADYFCYRCGEEGHIATKCKAPENATLVINKLVRSLKRAKGTKS DPNSHAEDRACFSKKSQIHSCESKGLPKGLVGPASTIAVKVGGHPCCALWDSGSQVTIVFDSWY SEHLSNVPILPLSGLSIWGLSSSNYPYKGYIVVDVTFPVALTGAEETVTILALVCPDPKGPQQF PLIIGTNASFFQRMTNGEGTNITRSAHSLRIQTHLDTTSFAVDQPEGQVRWKGPGMLNVPSQGE RYASCKIESDKPLRKDIFLIETSPVDSLPAGLLVSPVVFSSSAVDVNNFRILIQNETSKELSVP PGTVVAQIFPTDTVTVAHGVTESNDQINPDVFNFGDSNIPTAWEKRLRLKLAERKNVFSTQEWD VGLAKGVTHQIRLHDPHPFRERSRRIAPADIDDVRRHLKDLLAAGIIEESRSPYASPIVIVRKK SGAVRMCIDYRTLNSRTTPDQYVTPRIDDALDCLAGSKWFSVLDLRSGYYQIAMSEEDKEKTAF ICPLGFYQFQRMPQGITGAPATFQRLMEKVVGDMHLLQVIVYLDDLIVFGSTLEEHEERLMKVL DRLEEWGLKVSIDKCQFCQPKVKYVGHIVSAAGIAPDPEKVAAVTQWKEPTDLKSLRSFLGFCG FYRRFVKNYSSIVRPLTELTKGYPPAKGKSKVEGKKYFKETDQFGERWDNACKQAFQEIIKCLT QAPVLAFADPSLPYVLHIDASLSGIGAVLNQEHSDGLRPVAFASRKLSASEQRYHIHQLEFLAL KWAVVDKFHDYLYGVPFVVRTDNNPLTYVLTSAKLNATGHRWLAALATYNFSLQYKPGKHNIDA DVLSRYPAEPATSFSWTEIPQSGVKAICQLSNLSWSDEKSRLIDQLGVSPGSIPAVYSCPALLD VCHLEQLTHADLKLSQEQDPVIGKVKQDIARNKPLTPIKGSDPTLTLLQRQGPKLVIRNNLLYR VTKNQSGKEKVQLVLPEKYHLTVLRSLHDDSGHLGVEKTTELLRDRFYWPRMTSDIEQYIKNCG RCITRKTLPQKSAPLSHITSSGPLDLVCIDFLSLEPDSKGIANVLVITDHFTRYAQAFPTKDQR AVTVAKVLVEKFFVHYGLPSRIHSDQGRDFESRLIQELLGMLGIRKSRTTPYHPQGDPQPERFN RTLLSMLGTLEPAQKSKWSQHITQLVHAYNCTKNEATGYSPYQLLFGREARLPIDICFGISPAG EKGVTHLQYVEKMKAELQQAYQLAAETSLKAHQRNKKLYDTRVKPQLLTVGDRVLIRNLAVKGK NKLQDRWNSLPYVVVEKFKDLPVYKLRPERGMGAIRTMHRDHLLPVGENVRFSKPNDSNPSTQS PVTRAQSGKRVQKEKKVENVEQVRDENHETSESEDDNLCYYYPKLIPALRTLPTPQIAVEPEIP AEYGPELNSECEARKDTVEEEAREVLNQPAEAVDDQGVGDNDHRNVPKPGSEPAVCRKSTREVK PVIKLSYDDLGRPTDKPLTMVHRGMVVHIEDLSKTRKSCNTVWCHPMAQCSQCVPTAPGPIVRT VIQF
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Derived: [1] (consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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© 2001-2008 - Genetic Information Research Institute