Repbase Reports |
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| 2003, Volume 3, Issue 9 |
| September 30, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 181 |
HARBINGERN8_DR |
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HARBINGERN8_DR is a nonautonomous DNA transposon - a consensus. |
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Submitted: 30-Sep-2003 |
Accepted: 30-Sep-2003 |
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Key Words: Nonautonomous DNA transposon; HARBINGER superfamily; 3-bp TSD; 25-bp TIRs; Dr000419; HARBINGERN8_DR |
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Source: consensus |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio |
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| [2] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: HARBINGERN8_DR, an ancient family of Harbinger-like nonautonomous DNA transposons from zebrafish. |
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Journal: Repbase Reports 3:(9) p. 181 (2003) |
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Abstract: HARBINGERN8_DR copies are flanked by 3-bp target site duplications generated upon their integration in the genome. It has 25-bp terminal inverted repeats (3 mismatches, including 2-bp termini). The consensus sequence is 78% identical to the unclassified Dr000419 repeat [1]. The HARBINGERN8 family is several millions years old, its copies are ~94% identical to the consensus sequence. There are ~100 copies of HARBINGERN8_DR in the genome. HARBINGERN8_DR is classified as a putative member of the Harbiger superfamily based of the 3-bp target site duplications and the 5'-GGC terminus that are common for different Harbingers.
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Derived: [2] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References:
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