Repbase Reports |
|---|
| 2003, Volume 3, Issue 2 |
| February 28, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 14 |
CR1-3_AG |
|||
|---|---|---|---|
CR1-3_AG is a CR1-like non-LTR retrotransposon - a consensus sequence. |
|||
|
Submitted: 28-Feb-2003 |
Accepted: 28-Feb-2003 |
||
|
Key Words: non-LTR retrotransposon; CR1 clade; DNA/RNA-binding; PHD finger; AP endonuclease; reverse transcriptase; CR1-3_AG |
|||
|
Source: consensus |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
|
| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
||
|
Title: CR1-3_AG, a family of CR1-like non-LTR retrotransposons from African malaria mosquito. |
|||
|
Journal: Repbase Reports 3:(2) p. 14 (2003) |
|||
Abstract: CR1-3_AG is a family of CR1-like non-LTR retrotransposons. The CR1-3_AG consensus sequence was reconstructed based on multiple alignment of ~50 copies identified in the sequenced portion of the genome. Given the ~3% divergence of these copies from the consensus sequence, transposition of CR1-3_AG occurred less than 2 million years ago. The 3' terminus of CR1-3_AG is composed of the ATAA microsatellite. CR1-3_AG encodes two proteins: a 418-aa CR1-3_AG-ORF1p (positions 1057-2310) and 910-aa CR1-3_AG-ORF2p (positions 2314-5043). CR1-3_AG_ORF1p is DNA/RNA binding protein composed of the PDH domain (positions 5-40). CR1-3_AG-ORF2p is composed the AP endonuclease and reverse transcriptase domains. Putatively, the last protein is translated through the ribosomal frameshift. CR1-3_AG-ORF1p: MAGICSACANDIVAADRIVKCQGWCNSEFHFSCSGLSEELSATIESCAQLFWACKACVKFHKDPRTAVLR SSTPYTHTSVDLLSSIADLKAGLRSELSQHTTAIKLELLEVLKAEIRSCLRSTHAATDLPSQRPIHHNSA PKLFNSVVKNIPGTITPTLQQYPSLAASLSVSANEPSSFTNMPPxYNPQTPLLRGSGSPLDSDTLDTIPH TDTRMWLFFTRFSPSVTTEQISLMVQVRLALDKRDVFVHRLTKLGADTSTLSFISFKVGIPATLRNKALS PKTWPSALTYREFRDYRTNNYNTNTCATTETNSMLDQNVTLATDTYHNPLSHSGGSAAMPTTTTDTLAQP VTISSPAMTTTDTALFTNEPHLDLNERMLVTTTPTRSPPECLAAPKKRPKRGNAKRTDESADAGPSDE CR1-3_AG-ORF2p: QSCTASGDAPRSAHPSLSIYYQNVRGLRTKTTNLRLALSESEYDFIILTETWLTQSIPSSLLTDDHYHIY RCDRNLSNSALSRGGGVLIACSSSIPTCEIASPNTILEQLWIKTLLPGVSVYIGVVYIPPSHANDPAVMN ALHDSVREISSRIKESDLLYVFGDFNKPDIRWELTNTSEATDCSPCYSVMHYAPLCNSVANTDFVDGLHS TGLFQLSGIANQSGRQLDLVFANLAATNILCDSITPLHSVNGTSALENSLPYVTHCSIPLLSEDFHHPSL DMMIYYPVQLSHTTNSHTRSTVNRNFFKTNVERMNSLIVSFDRNFDCSNFATIDEATDFFSVFMRSAINS CVPVAQRKSGPDWSNASLRRLKKIKSKAYADYSRTRSSLHRRIFFDALNNYRRxNRVLYRSFIRRTERQL FSKPTRFWSFWNKRRNIRSIPPSMSYNGxTSIDTSDICNTFANRFADAFTLPVHNPNTLAEATRNTPSDA IDFIIPTIDEALIARTLNDIKPSTSSGPDNIPAYILKHCRQSLAPILAKIFNDSLMRGTYPASWKHARMV PIHKKGSRLHASNYRGIVSLCACAKVFELILYNPLLTAVQNYMSPSQHGFLPRRSSTTNLAEFVGYCFDN MDRGTQVDAVYIDFRAAFDSISHDILLSKLKKLGFLDWHITWLRSYLTGRSYYISIGSHRSHSFTSSSGV PQGSNLGPLLFLIYINDLSFVLPPGQHLMYADDVKIFAPVRNDSDCVRLQTILENLDSWCSRNALQVCAD KCQCISFSRARHPITFTYTMLNTALARTTCIRDLGVLLDQKMSFRPHIDSVVAKGNQLLGLITRTCSEFT DPMCVKSIFCAIVRSCLEYCCPIWCPLGVGDINRLEAIQRRLTRYAVRLLPWQSHHARPTYHQRCLLLGH
|
|||
|
Derived: [1] (Consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||