Repbase Reports |
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| 2003, Volume 3, Issue 10 |
| October 31, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 184 |
HARBINGER3_DR |
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Autonomous Harbinger-like DNA transposon - a consensus. |
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Submitted: 31-Oct-2003 |
Accepted: 31-Oct-2003 |
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Key Words: DNA transposon; Harbinger superfamily; transposase; DNA-binding protein; HARBINGER3N_DR; HARBINGER3_DR |
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Source: consensus |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: HARBINGER3_DR, an autonomous Harbinger-like DNA transposon from zebrafish. |
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Journal: Repbase Reports 3:(10) p. 184 (2003) |
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Abstract: HARBINGER3_DR is an autonomous Harbinger-like DNA transposon. The consensus sequence was built based on several copies that are 90% identical to each other. This transposon is characterized by the 3-bp target site duplications and 12-bp terminal inverted repeats. Protein machinery encoded by HARBINGER3_DR was involved in transpositions of HARBINGER3N_DR nonautonomous elements. HARBINGER3_DR encodes two proteins, 343-aa HARBINGER3_DR-1p (2 exons, positions 368-1037 and 1119-1480) and 221-aa HARBINGER3_DR-2p (2 exons, positions 3345-2940, 1762-1503). HARBINGER3_DR-1p is a Harbinger DNA transposase. HARBINGER3_DR-1p: MAVLALLEDIVNGRIRRERVFRDHGDFLAHDDDWLISRFRFPRAILLDLCAELGPLLERE TARSHALPVPLQVLTTLGFLATGSFQRELADRSGLSQSSLSRAMPAVWDGIIRMSSRYIR FPYHAVDQPNIKAQFAAIAGFPNVIGAIDCTHIAIKAPSEDEFAYVNRKHFHSINVQIIC DAQMRLTNIVARWPGSTHDSFILTNSMVGMRLQGGRVRDGWLLGDRGYPLKTWLLTPLNN PQTDQERRYNDAHSHTRSVVERAIGQLKCRWRCLDKSGGVLLYRPNKVCRIVLACGVLHN VAHRHGIPNGEPVAPPDDPDPGPVCIQPNQQAIQARQRVVAAI HARBINGER3_DR-2p is a DNA-binding protein that contains the myb/trihelix motif. HARBINGER3_DR-2p: MAKANKKRNFTECELEVLLSEVDRRKTVLFASLSSGINNKRKKIEWESLADAVNAVGSER RTVSELKKKWSDVKVQVKRRTAAHRQSVDRTGGGTGDTALTPFEERVASIVGDTLLSGVV SVSVGDTDVLEEAHEDGAGTSTDTDFVPPEEPEPSVSGATPRVSSASASAEARPSGRVLT QAVLESQQDIVRAIGDINNHLKNISNALTDISQSLKELVKK
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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