Repbase Reports

2002, Volume 2, Issue 7
July 31, 2002
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 26

L1-6_DR

L1-6_DR is a non-LTR retrotransposon from the L1 clade.

Submitted:
31-Jul-2002
Accepted:
31-Jul-2002
Key Words:
Non-LTR retrotransposon; endonuclease; reverse transcriptase; L1 clade; L1-6_DR
Source:
Danio rerio
Organism:
Danio rerio
Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
L1-6_DR, a family of non-LTR L1-like retrotransposons from zebrafish.
Journal:
Repbase Reports 2:(7) p. 26 (2002)
Abstract:
L1-6_DR is a family of L1-like non-LTR retrotransposon. This family was active recently (no stop codons in ORF2). It encodes two proteins: the 299-aa L1-6_DR1p (positions 154-1050) and the 1255-aa L1-6_DR2p (positions 1710-5474, a conceptual translation). These proteins are most close to corresponding proteins encoded by other L1-like elements. L1-6_DR1p is a putative RNA/DNA binding protein, and L1-6_DR2p is composed of the AP endonuclease and reverse transcriptase domains. L1-6_DR1p: MSPQKQATGNKRLKTLDDDVASIVSHAIEAQQEALREMVFGMLTEAIKSALAPFNDYINENGTVLRAIKE EIGSLGKNMASITSKVDDLQGNLRKTKKDTNHCLSQLDQIQRKCTDLEDRSRRNNIRLVNLPAGMEGDDP IGFLQKTLPKWIPDLSGRSNPIEIDRAHRVYSNSNSNRSRAMIFRLLRYPDRQAILQGARKAKPTLPGGA RLEFYADYSAATAQKRKAFSAVRSKLQQKGAETFLIYPATLKVSFKGQKYSFETPDEAEKYIEGLERTTS APARRSLYPQLQEAMEETD L1-6_DR2p: MVNLNIMSLNVRGLNSPSKRTKFLDYLRRKNIDVALIQETHLRIADVQRLQNKHYIPIVSSGYNSKKRGV AILFKRNHTFSIENLGSDNNGRMAYCCTNIGGKKLMFVNIYAPNSYDALFFPDITKTLLAYNEYSLIIGG DMNTVMDTVLDRSNPSIPMIQPQSSKALNWFTKDLNVSDTWRLLNPNVKEYTYFSPRHKSYSRIDYILLS PMIFSCVKNIEFLPQSISDHNAITTSLQFSTLTKPSRWRFNTLLLKNEEYISQLRSELTEFISINQNSVS NQDMFWAFIKGFLRNNAISFSARLKKNYLQQISSLEKRCGELERELEKKFATETQQKLKVERATLNDLLR QRTEYLMHITKHKYYIDGSKPSRLLALTLKKHEQRFNINAIKNSEQVLTSNPSDINKTFKKFFEKLYSSE IQTNTDHLEKIFESLNLTKLSKEDADNLDSEITLDELHNAVRDLHTGKSPGIDGIPGELYLVLWDLLGHI WLQTINKAITKGHFHKDLNTALITVLPKPEKDLFECSNYRPISLINEDIKIYAKVIAKRLQSVISKLIHP DQAGFITGRLASDNVRRVLHVIAESGKLKKPSGLLLIDAEKAFDRLEWGYLWYTLKNFNFGDQFIKMIQT LYSNPLARVTTVGIISDTFCIKRGTKQGCPLSPLLFNLSIEPLAQFIRQCKNITPIQLGSSVHSISLYAD DILLFLSDLQNSLPNALTALNEFGRISGFKINYSKSVLMPLNPIGHNVTNNTNIKISTKVKYLGIELSPT LQLIPKINYMSIYSKVEADIQRWMRLPSSPPARISTIKMNILPRINFISSMLPLPPPPNYWKKLDSILNK FVWNGKRPRVKWSTLQKNKTEGGWACPNFKLYHWSFILLSVVKWFEPDMQCSWKEIEKDLIFPTRLQDFL FSGFNHRKCILRYGPILSYTLQIFKKVETYFPSRTTWHNHSPLWHNVNLLSGRQPFNQPSWANKGILTLK DINGEKSILDFQELVNKFNISPNTLFIYFKIRAALKAHKTPWGKDLHTHPIVKWIYNAPRKGTVSYLYCC LSNINAHSFSKERLWLSDMSRPNTTIDWETVWHNTFHASTNPNHQFIHFKTIHRAYLTTRIRHIIGLSPD PYCKFCEPQRPDTFLHMMWECPEVQKLWDSVLDILFKVTKICFPKDPILLLLNDNSQFPLNAKVRKFWLA ASTATKKMLVQRWKPPHDLSVKHWLHSLLEILYLELSSARINHAKVDILTAWKIYICNVKEILDT
Derived:
Positions 156757 151065 Accession No AL627249 GenBank
Download Sequence - Format:
IG, EMBL, FASTA
References:

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