Repbase Reports |
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| 2002, Volume 2, Issue 7 |
| July 31, 2002 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 22 |
L1-2_DR |
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L1-2_DR is a non-LTR retrotransposon from the L1 clade. |
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Submitted: 31-Jul-2002 |
Accepted: 31-Jul-2002 |
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Key Words: Non-LTR retrotransposon; endonuclease; reverse transcriptase; L1 clade; L1-2_DR |
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Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: L1-2_DR, a family of non-LTR L1-like retrotransposons from zebrafish. |
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Journal: Repbase Reports 2:(7) p. 22 (2002) |
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Abstract: L1-2_DR is a family of L1-like non-LTR retrotransposon. This family was active recently (ORF1 and ORF2 have two stop codons only). The element is incomplete (its ~100-bp 5' terminus is deleted). It encodes two proteins: 469-aa L1-2_DR1p (positions 1-1407) and 1280-aa L1-2_DR2p (positions 1513-5353). These proteins are most close to corresponding proteins encoded by other L1-like elements. L1-2_DR1p: YIPGSVWLQLVREAHQIFFVYFCFCLKYIFVKLFFVCLVCPPSSVSCSGGVFFIYLFFFAMDGSTVTDLA MADGVEKANDNGLDRRQQETNQSEKEARKRIYLKEATVTVDIGQATEVRAIDVIKAETERIGDGKILAVR PKHNKEYEVTLEREEDADELMDELTIKGINCAVKRLQNRDYVVSFMHLPVYVADKDILDKLDHWGVCPIS KIKRRFYPGTNIEDGTRFVKTRFPKELASLPYSTRIETAEGPQYFRVMHSH*VKTCRLCLSPDHVVKDCP DFRCYKCEERGHFAKFCTAVKCPDCNKVLNKCECWIGEEEEEVEQQVGRQMYEGDNIQSEDKTTTQEKST ESESEKLQENETNGIDRVTEQEGTTWTQMDMTDSLKSVLEAAELSDSNNKDLNQGQQEDTFWTQMDITDS FQKALDTEETKGQSNDEQADLEGHLQKDGNKETQGKSAKRRRSLKINLI L1-2_DR2p: MNVFMSFMNVFIFFMVLGIVSFNARGLLDIRKFEKVKEMCKREDVILLQETNWREECMKEIRKRWSGEML YNNGDGRLGRGVAILLKENSGVLCKTIYNDKEGKCMICEMEYVKKKVIMVNVHAPTEENKKKEYYNVLRD YLKKHERVIIMGDFNTVFSKLEMAEGMVFKTDKGRKELKILMEEMNLIDVWRERNEQTKEYSRRQIVGNF CCQTRIDFILCTRNVEGFINKIKYEETSLSDHKPLFMKLDWSNVKRGPGVWVLNTAVLKNEDYVLSVKEI IQKEKGNEIYNEDKRMWWENVKYLVKKFTIKYCRQLQNCKKYKEKELKEKLENELKNENGKNIQKIKELQ GRLNEMEEEKFEGARLRSKAKFTVEGEKCTKFFFDLEKRRGKSEMIREIRSKNGNVVEQHEEILEEIRSY YEKLFCTEGIKEKEKGELLNLIKSRVEEGEKRECDEEIREEEIKRAISGLNKKKSPGIDGLGSEFYIVFK DILSSILKEVYDEIFENGEINKRMGMGLMKVIYKGKGDKVDLKNYRPITMLNTDLKILAKVLANRLKEVM PSIIKTNQAYSIKGRDIADTTMSIKDTIRYINDKQKDGFLISLDFEKAFDRVEHDFLFGVLKSFGFGENF IKWVQILYRGAVTRIKCNGFLTDCFKIRRSIRQGCPLSALLYALVAEPLGLAVKHEDRIKGIEVEGGVNK IFQYADDTTLILQDLASVKQAMETVQHFCKGSGAKINENKTGYLRFGRTEALSGHFTFKEMDEIKILGIV IGRDEKKAEVTMWEEILGGIERRLRFWKLMSLTLKGRVLILSVLMVSKLWNILYVSSMPLWMEKRLKQCF LDFLWEGKPPRIAYATLIGEVGKGGLGLIDVEQRKNSLRVKMVRKYLDEDNKAAWKRTMEYFLSKSGNFN MGDNILYMRMKKFMTEGLPDFYKELIGAWGKFLTCVHFNIQGRENILNQPLFLNSGILNQEKVVFFRKWW EVGITRVRDVLYEFKEGFLPVQYVIDVMDEAKEDFNRQDLIKEYDIIKNAIPAEWLTRIENMEENKQSKD VIVRFGEKWWNLKDSTVKMIYGFFRDGVFKKPRANENWIRMFKDVNEDNIWANIKGKLVQSKVENLEYLI RNKAVFTDIILNKIGMEESVTCKVCQDADEGFLHLFLYCNELKDFNEKCKSIILTLKGERDDELEWEKVL MLGVNKECNNEKLINLLVMLRKSAIWERRVAAKKEKAVLDVWNVFKRKVEKYVECLFYYFKLEDMQEAFY DVFTQEVSKILNDTGMKMPF
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Derived: Positions 96682 91187 Accession No AL645691 GenBank |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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