Repbase Reports
2002, Volume 2, Issue 6
June 30, 2002
Copyright © 2001-2008 - Genetic Information Research Institute, Mountain View, California
ISSN# 1534-830X
Page 5

HARBINGERN4_DR

HARBINGERN4_DR is a nonautonomous DNA transposon - a consensus.

Submitted:
30-Jun-2002 		Accepted:
30-Jun-2002
Key Words:
Nonautonomous DNA transposon; HARBINGER superfamily; 3-bp TSD; 16-bp TIRs; HARBINGERN4_DR
Source:
consensus 		Organism:
Danio rerio 		Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio
[2] Authors:
Kapitonov,V.V and Jurka,J.
Title:
HARBINGERN4_DR, a nonautonomous DNA transposon from Danio rerio.
Journal:
Repbase Reports 2:(6) p. 5 (2002)
Abstract:
HARBINGERN4_DR copies are flanked by 3-bp target site duplications generated upon their integration in the genome. It has imperfect 17-bp terminal inverted repeats similar to other HARBINGERs. There are approximately 1000 copies of HARBINGERN4_DR harbored by the zebrafish genome; they are ~8% divergent from the consensus sequence.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Bao,Z.
    Dr000061, an unclassified and uncharacterized repeat.
    http://www.genetics.wustl.edu/fish_lab/repeats/

© 2001-2008 - Genetic Information Research Institute