Repbase Reports

2002, Volume 2, Issue 5
May 31, 2002
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 16

GYPSY3I_DR

GYPSY3I_DR is an internal portion of the GYPSY3_DR LTR retrotransposon.

Submitted:
31-May-2002
Accepted:
31-May-2002
Key Words:
LTR retrotransposon; gag; endogenous retrovirus; pol; reverse transcriptase; Gypsy; GYPSY3LTR_DR; GYPSY3I_DR
Source:
Danio rerio
Organism:
Danio rerio
Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
The GYPSY3_DR LTR retrotransposon from zebrafish.
Journal:
Repbase Reports 2:(5) p. 16 (2002)
Abstract:
GYPSY3I_DR is an internal portion of the GYPSY3_DR LTR retrotransposon. GYPSY3_DR was active recently, it is flanked by 99% identical GYPSY3LTR_DR. Gag, called GYPSY3_DR1p, and pol, called GYPSY3_DR2p, are encoded by ORF1 and ORF2, which are slightly damaged by two false frame shifts. A conceptual translation of these proteins is shown here. GYPSY3_DR1p (300-aa, positions 18-1005): MNPETPGSQQLLATVAQHESTIQRHENAFAQQQTLMVQHSQLLADLMASVRQLFDKVHVDSTPAPAAASI PLPESRVISPMMEPRLPPPQRFSGDPSACDGFLXQCSLTFELQPSSFPSDRARIAYVITLLSGKALSWAT AVWKAKAPFCSNYKAFEQEFKRVFDHPISGRQASKRLLMLRQDTGSVAEYAIKFRTMAAGSGWNNEALMV CFQNGLSETIQDELATREPSLDLENLMEQAIRLDNRLRERYFNHPKPSFGVPTPAPTPTSQVSQFSAEPM QLGRTRLTPTERDRRMREQLCLYCGLSAHFRSTCPQLSGNAQSRTGQEGL GYPSY3_DR2p (1084-aa, positions 1047-4299): LFLPITLSWADQQSQFQAFVDSGAAGNFLDLTLAKTLNIPSEPLPDPLTVTALDGRPLAPGEVTHLTSQL CLSIYQHQERICFHLIHSPDFPVILGHPWLLQHNPYIDWPTSTVLGWSPTCQTTCLSQKSLQPSFESQEP LDLSRVPAQYHHLKAVFSKRRATVLPPHRPYDCAIDLLPGSCPPRGGIFSLSLPERTAMDLYIEESLAAG IIRPSTSPAGAGFFFVGKKDGGLRPCIDYRGLNKITIRNRYPLPLMSTAFEMLQGASIFTKLDLRNAYHL VRIRQGDEWKTAFNTPTGHYEYLVMPFVLTNAPAVFQALINDVLRDMLNKFVFVYLDDILIFSNSFQEHV QHVHKVLRHLLDNHLYIKPEKCQFHVSQVKFLVFVIEPEQIQMDPQKIQAVVDWPSPSSVKEVQRFLGFA NFYRKFILNFSTVAAPLFALTKGNMIRFRWGPEAEEAFKILKKQFTSAPVLLIPNADEPFTVEVDASEVG VGAVLSQRGEDKRLHPCAFLSHRLTPTERNNHVGDRELLAVKLALEEWRHWLEGAKHPFQVLTDHKNLEY IQQAKRLNPRQAHWSLFFNRFHFTLTYRPGSKNLKPDALSRVYVKSPQEDFIRPIVPSSKIVAPIRWELE GLIRKAQTKDPEPGGCPPNCLYVPRVVRSKVLMWGHSSQLTCHPGSARTLEFLQRRFWWPTIKEDVMAFV KACPTCNQNKSSHQPPQGFLHPLSIPHRPWSHISMDFITGLPPSQGNTTILVIVDRFSKAARFIPLSKLP TAKETAELVMNHVFRVFGIPQDIVSDRGPQFSSRFWQAFCQSLGTTTSLSSGFHPESNGQTERLNQDLET TPRCMTANNPTTLSQFIMWAEYAHNSLCSSATGMSPFECQFGYSPPLFPEQEVEVAVPSALQFVRRCRRT WKKARLKLLKVSQQYQHQANRRRRPAPNLRPGQRVWRNIPLRVDSRKLSQKFIGPFKIARKVNPVTYKLY FPKSLKINPTFHVSLLKPVLSSPFFVTGKPSPPRFVGGQAVYTVRRILDTRKVRKTRQYLVDWEGYGPEE RSWVLAKDILDPRLIRDFHALKMKSLGKNVRSRS
Derived:
Positions 61126 65446 Accession No AL591172 GenBank
Download Sequence - Format:
IG, EMBL, FASTA
References:

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