Repbase Reports

2002, Volume 2, Issue 5
May 31, 2002
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 13

ERV2-I_DR

ERV2-I_DR is an internal portion of the ERV2_DR endogenous retrovirus.

Submitted:
31-May-2002
Accepted:
31-May-2002
Key Words:
Endogenous retrovirus; LTR retrotransposon; gag; class I ERV; ERV2_DR; ERV2-LTR_DR; ERV2-I_DR
Source:
Danio rerio
Organism:
Danio rerio
Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
The ERV2_DR endogenous retrovirus from zebrafish.
Journal:
Repbase Reports 2:(5) p. 13 (2002)
Abstract:
ERV2-I_DR is an internal portion of the ERV2_DR endogenous retrovirus. It is flanked by 99% identical ERV2-LTR_DR. ERV2_DR belongs to the class I of endogenous retroviruses (4-bp TSD). It encodes ERV2p, a 455-aa gag-like protein that is closely related to this from ERV1_DR. The C-terminal portion of this protein includes the zinc knuckle motif present in gag proteins of many retroviruses. ERV2p (positions 718-2085): MFRQNTRLINTTEKGSLTTPSLSDQDFKSLLRQHMDSITESVRLNSTKKFSIDPDDVWTLDECKKVLDAC IRKNNVKVIICCYREFNLSRAKQQAQAKSELEKQIQELHAKITSLTKQLNLKKLKTDIEEVSQPDNKHPD LQIVSEKDISIQSDSDLPIGSVEVCGATRSKRTESSHNNTSVVQIQTVSRTLGPKEIDRLSQSLPSARTN FSEFSRALISKMRLYDMSLTEVTQLMSQILTESEFNSFEHTVTSKLQHASKDDLREGVLKALKNIVGPKI DWSKVTCCVQRKDESVNEFTERFCQSAITYSGLADNSDSVLDDKGPLVRIWSDGLAAEYRKALPFLNITW SSTTLRNNMNSLALWERDSYIKDRVRFEAAATKVNTEKTSNHKCLRKNICCHYCGKKGHWMRECRKNKKN FKEMNRVNQLLNSLLNALNIPLPSSLNPLSSPQRC ERV2-I_DR is 72% identical with ERV1-I_DR.
Derived:
Positions 31851 28761 Accession No AL591210 GenBank
Download Sequence - Format:
IG, EMBL, FASTA
References:

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