| 2002, Volume 2, Issue 5 |
| May 31, 2002 |
| Copyright © 2001-2007 - Genetic Information Research Institute, Mountain View, California |
| ISSN# 1534-830X |
| Page 4 |
CATCH3I_DR |
|||
|---|---|---|---|
Internal sequence of the CATCH3_DR endogenous retrovirus. |
|||
|
Submitted: 31-May-2002 |
Accepted: 31-May-2002 |
||
|
Key Words: Endogenous retrovirus; LTR retrotransposon; BELL/CATCH superfamily; CATCH3_DRp polyprotein; gag; protease; reverse transcriptase; endonuclease; CATCH3_DR; CATCH3LTR_DR; CATCH3I_DR |
|||
|
Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio |
|
| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
||
|
Title: CATCH3, an endogenous zebrafish retrovirus from the BEL/CATCH superfamily. |
|||
|
Journal: Repbase Reports 2:(5) p. 4 (2002) |
|||
Abstract: CATCH3I_DR is an internal portion of the CATCH3_DR endogenous retrovirus, which belongs to the BEL/CATCH superfamily. It is flanked by 99% identical long terminal repeats, deposited in Repbase as CATCH3LTR_DR. The 3' end of CATCH3LTR_DR and 5' end of CATCH3I_DR are not precisely defined. CATCH3I_DR encodes CATCH3_DRp, a 2007-aa polyprotein (positions 209-6229). CATCH3_DRp: MSLMNCDDDGATTCEQTETIVPFEKFETEHVREKRLIKLTPKALLEKLETLQKTRKCKLSKAKNLMAIIK DFMSNREYEKEVQCSFEKFIKLRDETKEMHNSVMVLLPSEEKEKQQTWFNGKMLICDEFVDDVEKWLSAE SQVSCSGVDARVCQEDVNPDDSISNISSCKSSKSSSKKSSSSVRSGRSSAASARIMAEAEKAALMARAAA LKEKHTLEVQQEKLRHRQEQLDIDAEIAAATAKIAVLNNQSLKTCTDDMNAYCDKGTVTLNPHAEAYVPI EVPLQESSRNVIQQIHSVPQIDPHFTSQMQSSSVMQNSDGIITSNLCSILQKQNEITTLLVQQQQSSTLP QRDIPVFDGNPLQYKTFMRAFEHGIEDKTKNSRDCLYFLEQYTQGQPREIVRSCQHMDAQRGYVQAKALL KEHYGNEFKIASAYVEKVLAWPSIKSEDVNSLQSYALFLRGCCNVMEEIDYMEELEMPSNLKTIIMKLPY KLRENWRTVACELMERRKQRARFKDIVIFVEHQVKMSSDPLFGDIQSTQPVQQKFQPKTKVRNSFATTVV TNNKSIQCCETDLRSKAPVVCLCCKRDHLLEQCTQMQNKLHKDKLNFLKEKGVCFGCFSFGHISKRCDKR LTCTVCGQKHPSILHIQQKERVCTQEQSHSSLSSAHVALTTCGQTGAGDDGDCALSIVPVQVKSSKGQTV IQTYAFLDPGSSTTFCSERLMHSLKLKGKETNIVLKTMGNQRAVNSTVLTGLEVSNLLDDTFYSLPEVFT QERMSVSRDNIVTQKDLENWPYLKGVEIPQIPADVDLLIGANASRVMEPWEVINSNGDGPYAVRTLLGWV VNGPLQGSRNKVKCSGVTVNRISVRKLEDMLGKQYNHDFNENSVEKKEMSREEHAFMEKVSKSIEFQDGH YKLNLPFRMEIPMLPNNLCVAKQRLIGLKRKFERNKIFHQEYKDFMDEVIKHGYAEIVPLHQLKQDEGKV WYIPHHGVYHPKKQTLRVVFDCGAAFKGTSLNDQLLQGPNLTNSLLGVLVRFRQEPIAFMADVKAMFHQV KVAEEDTDFLRFLWWPDGDINQDSVEYRMKVHLFGAVSSPSCACYALRRTAEDNKDDFPEKVIDTIHTNF YMDDCSKSVPSEEEAVLMIKDLTDVCLAGGFQLIKWISNSRIVLQSVPEEHRAQGIKMMDLDKDQLPMER ALGLWWCVESDTFNFKITSKDHPCTRRGVLSKVCSVYDPLGFLAPFTLTAKILLQELCRIRCGWDDLLPS NLQRQWSLWLKELEKMADFKMDRCLKPAGMDELTNVQLHHFADASTLGYGTVTYLRMETKQDVHVTFLLS KARVAPLKSVTIPRLELTAAVLAARVDKMLRAEMQFPLVDSVFWTDSTSVLKYIKNEDKRFLTFVANRIS AIREITTPLQWRYIPTTQNPADCCSRGLKADQLLTNREWINGPSYLWKPVEEWPAQIFDSALKADDPEVK RNICVNSTLVSEQSNATHRLITHFSDWTKLKVAVAWLLKLKTVLKQRSQKRKEIQASLDSSGVTSKKTEK ELRKLTGSVVTPNLSLQDVNEAEVAIVAFSQRQQFKKEIDALSVSPVSKISRDSKLYKLDPVYQDGILRV GGRLRNSAMPEERKHPIILAKDQHIATLILRHIHQQLGHSGRNYMLSELRKRYWIIKGNAAARRIISSCG HCRRFGVKVGEQKMADLPKERLLPDLPPFSNVGVDYFGPVEVKRGRSIVKRYGVIFTCMASRAVHLEVAY SLDTDSCINTLRRFICRRGQVTQIRSDNGTNFVAAEKELKESLRSWNQNKIQRAMLQKGVQWSFNPPGGS HYGGIWERVIRMVKIILNSILHQQILDDEGFHTVLCEIEAILNDRPITKLSDDPNDLESLTPNHLLQMKG KPVLPPGLFEKSELYSKRRWKQVQYMCDLFWKRWTNEYLPLLQDRQKWNKERRNFVPGDIVVIVDSSAPR GSWLMGRILEVFPDKNGLVRSVRVQTKTSVLERPVTKLCLLYDNMEI CATCH3_DRp is composed of gag-like, protease, reverse transcriptase, endonuclease domains similar to other retroviruses from the BEL/CATCH superfamily.
|
|||
|
Derived: Positions 46181 52553 Accession No AL590152 GenBank |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||
© 2001-2008 - Genetic Information Research Institute