Repbase Reports |
|---|
| 2002, Volume 2, Issue 4 |
| April 30, 2002 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 4 |
CATCH1I_DR |
|||
|---|---|---|---|
Internal sequence of the CATCH1_DR endogenous retrovirus. |
|||
|
Submitted: 30-Apr-2002 |
Accepted: 30-Apr-2002 |
||
|
Key Words: Endogenous retrovirus; LTR retrotransposon; BELL/CATCH superfamily; CATCH1_DRp polyprotein; gag; reverse transcriptase; endonuclease; CATCH1_DR; CATCH1LTR_DR; CATCH1I_DR |
|||
|
Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio |
|
| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
||
|
Title: CATCH1, an endogenous zebrafish retrovirus from the BEL/CATCH superfamily. |
|||
|
Journal: Repbase Reports 2:(4) p. 4 (2002) |
|||
Abstract: CATCH1I_DR is an internal portion of the CATCH1_DR endogenous retrovirus, which belongs to the BEL/CATCH superfamily. It is flanked by identical long terminal repeats, deposited in Repbase as CATCH1LTR_DR, and is characterized by 5-bp target site duplication. It is possible that CATCH1_DR is still active in zebrafish. CATCH1I_DR encodes one polyprotein, 2029-aa CATCH1_DRp (positions 190-419). CATCH1_DRp: MESEPPSEADPAVRPRSPRERHLPGHLADYDIQLPPSLHPEVPQTGASSQRPSRRSRHASTSISAGTMSS TSSRSHRSAHYRLPRHGLSDLQAAMLEEKLKTMDLEELQQQIEEEAIVDKECERLDTQAREAQYIQEQAT KARESIAKQVDTRRRLKKVQNELKAAKFVCELLKQESPDVSSNASQSSLAVDLRPEVSPQHDNAVNLNAS VQLMRSHSTPCHVSFVPASSVMHPPVLPVTNSVVTVSEPQLICVTSTPNITQPNIVTNSLAALSTIPPTL MSNSDLVAPLTFESSLVNKPQYCAANSATYSQAPSVRVHNVVPSPATVTVGSPLQVQCYPSMHSSPDGTS APYTGPAPDTSPIRSGLYPSLAQFPGLDMLAASAYGVPKPAIPHFDTGRESDFALLKMALENVMNNQPHL SEHYKYQVLLSHLKLPSALQLAKAYMYDPKPYTAAMQALQDKYGQPRQLVQSELSIILNAPAVKFGDAEA FDSFSLSIQTLVGMLKTLEGPNGYELRCGSHVDRLLSKMPPSNRDGFVEYCFSRGILQTGTDRTYTLPDL SEWLQMKSQAKRISNKAATMYQTENARFIKKEQPRSAPFRIKAKSTSILYSTDGSSAVQGHPKSKPPVKI QPFCPYCNMKDHFLHACPKFKMLTAEKIGEWLSTEKRCWKCGRTHPPDHCTLKKPCTKCKEIHLTILHEA ASQIQNNVLLVNVPSLQVYLDRPNRSQKVMLKIVKVLLHHKEKAMEAYAVLDDGSERSIVLSQVVDQLKL PTEPETLTLRTVHQDVVNLKGANVSFYVSPLHKPFRKYLISHAFTADNLRLSKHSYPVPALQRKYEHLKS LPLPSIDQAQPLLLIGSDMPHLLTPVQPVCTGSSHGPIAICTRLGWTLQGPTGLSQTSVSTPQCLHITTT TQNTELFRNVERLWQIDTLPYTNEKSATRSKHDQYALSLLQSDTTKVEVNGVMRYATPLLRRPNAELLKA SKEAVMANLRSTERKLAKDHKKAEAYCLEMRRLQEAGYVAEISIEEAEQSRESWYIPHHMVTHNGKDRIV FNCSYSYQGQALNDILLPGPILGPSLLGVLLRFRENPVAISGDVKGMFHQVRLLPTDKSVVRFLWRDMQR SNQPKIYEWQVLPFGTTCSPCCAIYALQMIAQTHSDGDPVLESTVKGSFYVDNCLHSLQTVAEARALVDN LRQLLLTCGFELRQWASNKPEVIQHLPPDARSSNSELWLSQKSTDLLEGTLGLLWNCLSDSFSYKPSQIE CFEPTLRNVYKVLASQYDPIGYLIPFTTRAKVLVQDLWKTNLTWDDPITSESLLSRWQTWLQELQGLNHI AVPRCYSPSDWQADKLNRELHIFCDASERVYGSVAYMRTENDQGHVHISFVLARSRVAPRKQMTIPRLEL SAALTGAQVANILQEELTVDINRIILWSDSSTLLQWLKSDSCRYKVFVGTRVAEIQSLTNINSWRYVDSA NNPADVITRGQTLNSLTPPCHWINGPPFLYQPDSCWPTLPADEPEPVTELKKSVICLHVLTCPDTTLPDV NQFSTWAELLKATVTSLHGAATPQTQPQDDSGSYILAEKLLLQQSQRDSFPEEFKALTTNRPLPSNSRLA SLSPEYDEVSGLIRVGGRLRHAHHLELDTTHPVVLDPQHYLTKLLIKDYDTTLLHPGLERVFAEVRRRYW ILRGREAIKKHQYLCTDCQKWRAKPKMPKMADLPPTRLRLYKPPFYSTGMDCFGPFTVKIGRRREKRWGI VFKCLTTRCIHLDLVESLDTDAFLMALRRFISRRGKPFELLSDNGTNFVGGDKELRAAYESMIPQLREQL AEQQITFRFIPPGAPHFGGVWEREVKSVKQALKVVLKDLTVTETVLRTVLIEVEGILNAKPLGYVSSDVS DLDPITPNILLMGRHDSSLPQVFYDSSNVLGTRRWKHSQILADHFWSRFIHYYLPNLQERQKWRKDGGEI GLDQVVLIVDPQLPRACWPVGKVTNTFPGLDGRTRSVEVQVRNRTYVRPVSRLVPLPKHTDDDPVNPDT CATCH1_DRp includes gag-like, reverse transcriptase and endonuclease domains similar to other retroviruses from the Bell/Catch superfamily. N-terminal region of CATCH1_DRp (positions 20-250) is similar to coiled coil domains present in various myosins. Gag-like domain (including zinc fingers) is located at ~420-770.
|
|||
|
Derived: Positions 62281 55361 Accession No AL591492 GenBank |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||