Repbase Reports |
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| 2002, Volume 2, Issue 10 |
| October 31, 2002 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 27 |
R1-2_DM |
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R1-2_DM is a non-LTR retrotransposon - a partial consensus. |
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Submitted: 31-Oct-2002 |
Accepted: 31-Oct-2002 |
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Key Words: Non-LTR retrotransposon; ORF1; ORF2; R1 clade; endonuclease; reverse transcriptase; R1-2_DM |
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Source: consensus |
Organism: Drosophila melanogaster |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta; Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: R1-2_DM, a family of R1-like non-LTR retrotransposons from D. melanogaster. |
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Journal: Repbase Reports 2:(10) p. 27 (2002) |
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Abstract: R1-2_DM belongs to the R1 clade of non-LTR retrotransposons. R1-2_DM is a separate family. Members of this family are ~92% identical to the R1-2_DM consensus sequence. Therefore, this family was active a few million years ago. R1-2_DM is only 70% identical to R1_DM. The sequence is incomplete, its several hundred bp long termini are not reconstructed yet. There are ~15 copies of R1-2_DM present in the sequenced portion of the D. melanogaster genome. The R1-2_DM consensus sequence includes two open reading frames that encode a C-terminal portion of R1-2_DM-ORF1p (positions 1-716) and N-terminal portion of R1-2_DM-ORF2p (positions 719-3216) FW_DM-ORF2p (positions 1256-3832). These proteins are most close to the R1-like DNA/RNA-binding and endonuclease/reverse transcriptase proteins, respectively. R1-2_DM-ORF1p: XXCSAVVMCDDPSIPGKQSAERVRKEVAPALGVRVHEVRELKCGGAVIRTPSVSEMKKVVANKKLAEVGL KVQPKKSQRPKVQVFDVDSGIQPDGGIVRQQFKEEFSPAAFMKEMHLNTKPWSVTDGERANLTLEVDEKA LNVLEQTGRVYIKWFSYRCRSLVHTYACHRCLGFDHKVSQCRVKETICPQCGQAGHTAPRCTNPVDCRNC RFKGHPSRHSMLSFTCPIYGAVLARVNARH R1-2_DM-ORF2p: MFSFLQANCGRGRAPTIELxVRLRDSGHLFALVQEPYVDL AGRITGVPSGMRVFSDRRGKAAVYVDSTDSICMPIEPLVTEFGVCVSVTGSFGSIFLCSVYCQFNTGLEQ YLGYLDAVLLLASRTPVILGLDANAVSPMWFSKLPERAQGSANYLRGELLSDWIQGCRAGVLNMPCDAFT FETPYARSDIDVTLTNDAASTCATYDWRVDEWDLSDHNIINVVVTRDPPNTVESFAPVPSWNFSAARWRP FEDEVTRLASELPDEFADTPLDDQVSAVRSLVHSVCDQVLGRRRPKTARKIVWWTAELSSKRQEVRRLRR RLQTARARASHDAEQLVSQLREISDQYKELILKYKEDNWRRLVGENKDDPWGQVFRICRGRKRTTELGCL RxGGRQYVTWHDCAGVLLRTFFPFSSFRHPLSFLKRFHHRLSSEVDACVARLKSRRSPGMDGITAVIFKA VWRAIPEHITAFYSRCIRSGYLPSKWKRTIAVALLKGSDKDRSDPASYRGICPLLFVFGKVLEGIMVNRL KDVLPDGSRWQFGFREGRCVEDAWRHVVSTVAANQAQYMLGIFVDFKGAFDHVEWDVVMRRLIDSGCREA SLWRSFFSGRSASLVSRYGEVTVPVTRGCPQGSISGPFIWNLMMDSLLQRLEPLRGFSALADDLLLFVEG TRIVLESKGEQLMSVVGAWEVGVAVLTSKTALLLGHFAQSRHTTVRFAGASLPYVDKYRYLGVTVVERLN VLPHIKSLRDRLTGVVQALARVLCVDWGLSPRARRTIYAGLMVPCALFGASVWYDGPSSAMRHLVSCQRR ILLGCLPVCRTVSTVAMQVLxG
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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