Repbase Reports |
|---|
| 2002, Volume 2, Issue 10 |
| October 31, 2002 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 8 |
HELITRON1_AG |
|||
|---|---|---|---|
HELITRON1_AG, a rolling-circle DNA transposon - a consensus sequence. |
|||
|
Submitted: 31-Oct-2002 |
Accepted: 31-Oct-2002 |
||
|
Key Words: DNA transposon; HELITRON class; Rep/helicase; HELITRON1_AG |
|||
|
Source: consensus |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
|
| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
||
|
Title: HELITRON1_AG, a rolling-circle DNA transposon from African malaria mosquito. |
|||
|
Journal: Repbase Reports 2:(10) p. 8 (2002) |
|||
Abstract: HELITRON1_AG is a first example of HELITRONs (a rolling-circle DNA transposons) present in insects. The A. gambiae genome contains many families of HELITRONs. HELITRON1_AF is one of them. A defective copy of a HELITRON-like element is also present in the D. melanogaster genome (AE002840, positions 9827-9264). HELITRON1_AG has all basic hallmarks of HELITRONs: it is flanked by 5'-TC and CTAG-3', is inserted into the AT target site and encodes a 1792-aa HELITRON-like Rep/Helicase protein, called AGHEL1p. AGHEL1p (positions 820-6195): MQPSVSDIVSQNLTPPEETPNEKKARLQRKRQALYRAKKRLPGAAPTLAAVQDDQQAVPSTLAGSSLSAA SAILQQQQRRNTDDELLNEIAGRYSTPPDETPPEKKARLARKRQALYRAKKRLAGAAPTVAAVQDDQQAV PSTSAGTSLSGAPAILQQQQLRRNIDDDLLNEIAGRYSTPPDETPPEKKARLARKRQALYNARKRMVQTP NVATVVNRAPAPASAPVPAPAPAPTPALVDPTAAVAIRVPIHQQLQTYVRHLRDHEADQQRQFIARRRMT GHLRVAHGNHESYSCPSLHTLAPRVPCNFCSALKWPGEPPSVCCNSGQVVLPPFPEPPAELRQLFDVPQF LLNIRRYNNAFAFTSIGASIRGNDPVRQDLRVGHGGIYNYRIQGALCHRIGSLAVLPGRPPCYAQLYFYD SSSEGQYDEMLNARAKAYGSELNREILAILQRVFSTHNPIAEMFKHAYERMSVRDDLRLCIHSRIPGIDQ RRYNAPTADEVGGVFVCDDTTGATEHTRDIVLQHRATGYLQPVFDTNQLADALQYPILFPRGETGWTYGM PKVQRRTRQQQQPSRPTSSSNGAAHIDENDDAAEDPNPELDGAERSANQITPREYAAYRIAWRENAQTLM HRAGRLFQQYCVDQYCKIEMQRLKYLREHQAQLRTEAYTGFMDLAGAEGTIADLHPDNLPNVAVEIPVVQ EPPVAPRRSIIDPPSNLSRTGTRVILGPSFVGSNRYMRAQYQDAMAIVRALGKPDLFITVTCNPKWPEIT QCLLPRQQAPDRPDVIVRVFRLKLKAILNDLTMGALGIEVARIHVIEFQKRGLPHAHILVILAEEDKPQT PADYDKIVSAELPNPATSSQLFETVQSCMMHGPCGAANPAAPCMKDGTCEKGFPKSFCEQTRSMDNGYPQ YRRRNNGRSVTVKGIELDNRYVVPYNPWFTHKYNCHINVEVCTSISSVKYLYKYVYKGHDRLSVTLAVGN DEIQQHIDARYLSPTDSCWRIMRFELQAKTHTVVTLPIHLENQQNVFFRANETVSCVLNRGNHTMLTRFF QLAAHDNFARALLYHDVPTYYRYAKPTANQRLPWQEPGTKHWIRRIRTGHKTVIGRMVSCSMQLMERYCL RLLLCYRKGPTSYEDLRTVNGSVCETFQQAAINEGLLEDDSEWDRALEEAATYRMPAQLRHFFALILSSG MPQNPRTLWESYASEMSEDFHHRNRDRYTTEESDLNKLLRDVEHFRALSDIDRYLRGTTPSKVLTSSPGM PQLSEYEHVQAHIMDDDDVNEFIIAERSYLITDLDATLATVHQLNDEQRMVYETVTAAIDRQLATAASQA NAGDQRLFFLDGPGGTGKSFLVEKILAHVRRCGEIALATAASGIAALLLTGGKTVHSTFKLPLDLNNHST CSITVQSKRAEMLRQTALIVWDEASMSSRFALEAVDRTLQDITGVQLPFGGKVVLLSGDFRQILPIVPKG TDAQIINECIKKSTLWPLFRSLQLRDNMRVRTAPNANQASELRDFANLLLRIGEGRHDTFAGLDPSLAKI PHDMIVPHTANPTNDLNTLIDKIYPDMQRHFQHPSFFSDRAILSPLNVDVASVNNLVLDRIPGPEQEYRS VDTLVNPEEHEHLQLPSEYLNTLNVSGIPVHRLRLKRFAPVLLLRNLNSDMGLCNGTRLQIVGLKRNCLH AKILTGTRRGEDVLLPRIFCDSNDKGHPFQIRRKQFPVQVCFAMTINKSQGQSLHHLGLYLPQDVFAHGQ LYVALSRVTSRANIAVLIPNPKRADEEGVSTSNIVYREVVDR
|
|||
|
Derived: [1] (Consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||