Repbase Reports |
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| 2002, Volume 2, Issue 1 |
| January 31, 2002 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 5 |
CHAPLIN1_FR |
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DNA transposon; hAT class; MER1 group; CHAPLIN1_FR. |
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Submitted: 31-Jan-2002 |
Accepted: 31-Jan-2002 |
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Key Words: DNA transposon; hAT class; MER1 group; CHAPLIN1_FR |
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Source: consensus |
Organism: Fugu rubripes |
Taxonomy: Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Oncorhynchus; Eukaryota; Metazoa; Chordata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Acanthopterygii; Percomorpha; Tetraodontiformes; Tetraodontoidei; Tetraodontidae; Fugu |
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| [1] |
Authors: Smit,A.F.A. |
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Title: Initial survey of interspersed repeats in Takifugu rubripes. |
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Journal: Repbase Reports 2:(1) p. 5 (2002) |
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Abstract: The CHAPLIN transposons are hobo-Activator-Tam3 like elements belonging to the distinct MER1/Charlie branch. This clade is characterized by the preferred 8 bp duplicated target site NTCTAGAN. The current CHAPLIN1_FR is not a full-length, autonomous element. The ORF from bp 300-720 region encodes a fragment of a protein most similar to the CHAPLIN8 and mammalian CHARLIE8 transposases. On average, copies are 6% diverged from the consensus.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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