Repbase Reports |
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| 2001, Volume 1, Issue 4 |
| April 30, 2001 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 14 |
ATHILA8B_I |
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ATHILA8B_I is a an internal portion of the ATHILA8B endogenous retrovirus - a consensus sequence. |
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Submitted: 30-Apr-2001 |
Accepted: 30-Apr-2001 |
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Key Words: Gypsy-like endogenous retrovirus; ATHILA superfamily; long terminal repeat; reverse transcriptase; integrase; ATHILA8BLTR; ATHILA6B_I. |
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Source: consensus |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryotae; mitochondrial eukaryotes; Viridiplantae; Charophyta/Embryophyta group; Embryophyta; Magnoliophyta; Magnoliopsida; Capparales; Brassicaceae; Arabidopsis |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: ATHILA8B, an ancient family of Athila-like retroviruses. |
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Journal: Repbase Reports 1:(4) p.14 (2001) |
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Abstract: ATHILA8B_I is an internal portion of the ATHILA8B endogenous retrovirus. There are several copies of ATHILA8B_I in the genome; they are ~90% identical to the consensus sequence. The consensus sequence was derived from 4 proviral copies. The internal portion is flanked by 90-92% identical LTRs (ATHILA8BLTR). Second half of ATHILA8B_I (positions 2707-5020) is 85% identical to the second half of the ATHILA8A_I internal portion (see comments for ATHILA8A_I). The first half of ATHILA8B_I (positions 483-2696) encodes a 737-aa protein, ATHILA8B1p, which is similar to the ATHILA ORF1-like proteins. ATHILA8Bp1 ATDLCSTDKTGNRTIADYDAPNRYPQERAAIRVPSPRQNFEIKPHIIGLVKQNQFHGLNTEHPMDHIDLF EEICSTTQSRGIPKDYLKCKFFPFSLADKATRWLKSLHPGSITSWEGCKSAFLNHFYTKSRSNSLRNKLQ GFQQRPVESFYEAWERFKDYERDCPHHGFPEGNLISTFYRGLHAKFQLSLDTASNGDFTTKNVDDAHAFI ENLATSNSNASTDFDRTIRTKDSDSKEMFELKNMMAQLLKNQNRALNACETVGNTEAFQGYNDTFDQEEE VNYVGTQGFYQNRGYNNNFNNNFRGNSNLSYRNPNVENPQDQNYPPVKPFQGRFQNANYNTNNFQPRASF NNNNTAPFETGPTEPAPSNESKLEMMIQDMTNENRKANQAMEVRMGNMYGDLNGKFESLTTHMKKLETQI VQNSESVKRQPDTLPGRTEENPKGFCNTVASTQTPANEAESSVPPVEPDQDVACKPEEDVKVKPECQPLR KLPKAEDPGRFVCSCSITSIEFPDSLCDFVNLMSGSVEEKIGLRDLSPSNLNLVFGDASQKTPDGLVCDL LLVVGDCLVPTDFHVLEMDEEIDKPLILGRPFLATVGAVIDHNRKKTIFTKVNKKVIYPTISKTVPNPVS PLPYHPVGPDINKEEKGNRVIRKRAPKLPSKPPNPPKISKVKIIIPPELGKESKEHIQEMIKRTKEVFLQ DKVSKTPFRRKLTIEAGAGYQDIKDAKGEAIPEAPPH
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References:
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