Repbase Reports |
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| 2001, Volume 1, Issue 4 |
| April 30, 2001 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 2 |
ATCOPIA93_I |
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Internal region of the ATCOPIA93 copia-like LTR-retrotransposon. |
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Submitted: 30-Apr-2001 |
Accepted: 30-Apr-2001 |
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Key Words: LTR-retrotransposon; COPIA superfamily; internal region; copia-like polyprotein; reverse transcriptase; the ATCOPIA93 family; ATCOPIA93LTR; ATCOPIA93_I |
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Source: Arabidopsis thaliana |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Internal portion of the ATCOPIA93 copia-like LTR-retrotransposon. |
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Journal: Repbase Reports 1:(4) p.2 (2001) |
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Abstract: ATCOPIA93_I is an internal region of the ATCOPIA93 copia-like endogenous retrovirus flanked by the 96% identical ATCOPIA93LTR long terminal repeats and a 5-bp target-site duplication (CAGCC). ATCOPIA93 forms a separate family of copia-like retroviruses present in the A. thaliana genome since members of other families are less than 75% identical to ATCOPIA93_I. Chromosome 4 (AL161500, 110753-116088) harbors the ATCOPIA93A provirus whose identical LTRs and internal portion are 88% and 91% identical to these in ATCOPIA93. ATCOPIA93A is a subfamily of ATCOPIA93. ATCOPIA93_I encodes remnants of the ATCOPIA93p copia-like polyprotein. The ORF which encodes ATCOPIA93p is damaged by 5 false stop codons and by 5 frame shifts induced by indels.
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Derived: Positions 33043 28494 Accession No AC006423 GenBank (rel. 124.0) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References:
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