Repbase Reports |
|---|
| 2001, Volume 1, Issue 3 |
| March 31, 2001 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 1 |
ATCOPIA18A_I |
|||
|---|---|---|---|
Internal region of the ATCOPIA18A copia-like LTR-retrotransposon. |
|||
|
Submitted: 31-Mar-2001 |
Accepted: 31-Mar-2001 |
||
|
Key Words: LTR-retrotransposon; COPIA superfamily; internal region; copia-like polyprotein; reverse transcriptase; the ATCOPIA18A family; ATCOPIA18ALTR; ATCOPIA18A_I |
|||
|
Source: Arabidopsis thaliana |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis |
|
| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
||
|
Title: Internal portion of the ATCOPIA18A copia-like LTR-retrotransposon. |
|||
|
Journal: Repbase Reports 1:(3) p. 1 (2001) |
|||
Abstract: ATCOPIA18A_I is an internal region of the ATCOPIA18A copia-like endogenous retrovirus flanked by the 99% identical ATCOPIA18ALTR long terminal repeats, and a 5-bp target-site duplication (GTGTT). ATCOPIA18A is a subfamily of the ATCOPIA18 family. There is a 77% identity between the ATCOPIA18A_I and ATCOPIA18I internal sequences. ATCOPIA18A_I encodes remnants of the ATCOPIA18Ap copia-like polyprotein. The ORF which encodes ATCOPIA18Ap is slightly damaged by false stop codons and other mutations.
|
|||
|
Derived: Positions 54058 49009 Accession No AB025602 GenBank (rel. 124.0) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||