Repbase Reports |
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| 2001, Volume 1, Issue 2 |
| February 28, 2001 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 24 |
ATCOPIA69_I |
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Internal region of ATCOPIA69 copia-like LTR-retrotransposon. |
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Submitted: 28-Feb-2001 |
Accepted: 28-Feb-2001 |
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Key Words: LTR-retrotransposon; COPIA superfamily; internal region; copia-like polyprotein; ATCOPIA69LTR; ATCOPIA69_I |
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Source: Arabidopsis thaliana |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Internal region of ATCOPIA69 copia-like LTR-retrotransposon. |
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Journal: Repbase Reports 1:(2) p. 24 (2001) |
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Abstract: ATCOPIA69_I is an internal region of the ATCOPIA69 copia-like endogenous retrovirus flanked by the 4% divergent ATCOPIA69LTRs and a 5-bp target-site duplication. ATCOPIA69p, a 1348-aa copia-like polyprotein encoded by ATCOPIA69_I is free of false stop codons and frame-shifts. ATCOPIA69p: MSSTKLKISQFDGSGDFSLWKTRMFSHLRVMGLKDALVEQEQLPPLKDEEESDPAKKKQRIDEEKARIDR DEKAMDMIFINVGDKVLRNIENSKTAAEAWATLDRLYLVKSLPNRVYLQLKVYNYRMQDSKTLEENVDEF LKMISDLSNLQIQVPDEVQAILILSALPDSYDMLKETLKYGREGIKLDEVISAAKSKELELRDSSGGSRP VGEGLYVRGKSQAGGVGNKSTEGKKVCWICGKEGHFKRQCYKWLEKNKGNSAGETALVKDDAQDLVGLVA SEVNISEDKNDQEEWIMDTGCSFHMTPRKEYLINFEKAKSGKVRMANNSYSEVKGIGSVRFVKKDGTSIV LQGVRYIPEISRNLISMGTLEAEGYEFKGNHGILRVMQDSNEFIRGRRRASLYILEAQAEMANSESLVTT TGETDQTQLWHSRMGHIGQQAMDILSKKGCFGNDKISEIKFCEDCVIGKTHKVSFGTAQHTTKEKLDYVH SDLWGSPNVPYSLGRCQYFISFTDDWSRKVWIYFLKTKDEAFQSFTEWKTMVETQSERKLKHLRTDNGLE FCNHKFDGICKKEGIVRHRTCTYTPQQNGVAERLNRTIMNKVRSMLSESGLDKKFWAEAAATSVYLINRS PSSALENKIPEELWTSAVPSLSGLKRFGCIVYVHSQEGKLDPRAKKGVFLGYPQGVKGFRVWMIDEEKCS ISRNVVFREDVMYKDILNKLTSGMSLELPFVTNKVPSFECTGLNKDGERLVQGGAIEKESDETLELSNTD QEDTGTERIQRTHQIARDKPKRQIVIPSRLKDYEMNEEILDEIAGYAYLITEDGGNPEPTDFQEVLQDPD NKKWLEAADEEIESLIKNKTWTLVDRDNSQKPIGCKWIFKRKAGIAGVEQPRFKARLVAKGYAQKEGIDF QEIFSPVVKHVSIRLLLSMVVHLNMELQQMDVKTAFLHGYLDETIYMDQPEGYIHEKYPDKVCLLKRSLY GLKQSPRQWNNRFNEFMQRIGYERSKYDSCVYYKILLSGDYIYLLLYVDDILIASKDKEQVCELKTLLNS EFEMKDLGDAKKILGMEITRDRQAGTLTISQEGYLLKVLKDFGMDQAKSVNTPMGIHFKLKPANDEEVQK QSEVMRAIPYQSVVGSLMYSMISTRPDLAHSVGLVCKFMSKPLKEHWQAVK*ILRYISGTLDRKLCYKNE GECILEGYCDSDYAADKGSRRSTSGVVFTFGGNTISWKSNLQKVVALSSTEAEYMALTDAAKEAIWLKGL VNELGFTQKTVNIHCDSQSAIALAKNAVYHERTKHIDVKYHFIRDLVNNGEVQVLKIDTEDNPADIFTKV LPVSKFQDALELLRVSQN
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Derived: Positions 133749 129480 Accession No AL161502 GenBank (rel. 124.0) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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