| 2001, Volume 1, Issue 2 |
| February 28, 2001 |
| Copyright © 2001-2007 - Genetic Information Research Institute, Mountain View, California |
| ISSN# 1534-830X |
| Page 12 |
ATCOPIA63_I |
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Internal region of ATCOPIA63 copia-like LTR-retrotransposon. |
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Submitted: 28-Feb-2001 |
Accepted: 28-Feb-2001 |
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Key Words: LTR-retrotransposon; COPIA superfamily; internal region; copia-like polyprotein; ATCOPIA63LTR; ATCOPIA63_I |
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Source: Arabidopsis thaliana |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Internal region of ATCOPIA63 copia-like LTR-retrotransposon. |
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Journal: Repbase Reports 1:(2) p. 12 (2001) |
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Abstract: ATCOPIA63_I is an internal region of the ATCOPIA63 copia-like endogenous retrovirus flanked by the identical ATCOPIA63LTR long terminal repeats, and by a 5-bp target-site duplication. ATCOPIA63_I encodes the 1348-aa copia-like polyprotein ATCOPIA63p. ATCOPIA63p: METTMQQVIPIFNGESYGFWKIKMITILKTRKLWDVIENGVTSNSSPETSPALTRERDDQVMKDMMALQI LQSAVSDSIFPRIAPASSATEAWNALEMEFQGSSQVKMINLQTLRREYENLKMEEGETINDFTTKLINLS NQLRVHGEEKSDYQVVQKILISVPQQFDSIVGVLEQTKDLSTLSVTELIGTLKAHERRLNLREDRINEGA FNGEKLGSRGENKQNKIRHGKTNMWCGVCKRNNHNEVDCFRKKSESISQRGGSYERRCYVCDKQGHIARD CKLRKGERAHLSIEESEDEKEDECHMLFSAVEEKEISTIGEETWLVDSGCTNHMSKDVRHFIALDRSKKI IIRIGNGGKVVSEGKGDIRVSTNKGDHVIKDVLYVPELARNLLSVSQMISNGYRVIFEDNKCVIQDLKGR KILDIKMKDRSFPIIWKKSREETYMAFEEKEEQTDLWHKRFGHVNYDKIETMQTLKIVEKLPKFEVIKGI CAACEMGKQSRRSFPKKSQSNTNKTLELIHSDVCGPMQTESINGSRYFLTFIDDFSRMTWVYFLKNKSEV ITKFKIFKPYVENQSESRIKRLRTDGGGEFLSREFIKLCQESGIHHEITTPYSPQQNGVAERRNRTLVEM ARSMIEEKKLSNKFWAEAIATSTYLQNRLPSKSLEKGVTPMEIWSGKKPSVDHLKVFGCVCYIHIPDEKR RKLDTKAKQGIFVGYSNESKGYRVFLLNEEKIEVSKDVTFDEKKTWSHDEKGERKAILSLVKINSQEQGG GNDLNAHIDQVSNAFNQLHISSRGVQNSHEEGEESVGPRGFRSINNLMDQTNEVEGEALIHEMCLMMAEE PQALEEAMKDEKWIEAMREELRMIEKNKTWEVVARPKDKNVISVKWIFRLKTDASGEAIKRKARLVARGF TQEYGVDYLETFAPVSRYDTIRTIMAIAAQQGWKLFQMDVKSAFLNGDLEEEVYIEQPPGFIEEKEEGKV LKLHKALYGLKQAPRAWYGRIDGYFIKNGFERSINDAAFYVKKTSKEILVVSLYVDDIIVTGSNVKEIER FKEEMKNEFEMTDLGELSYFLGMEVNQDDEGIFLSQENYAKKLLKKFGMQECKSVSTPLTPHGKIEEVLS EKLEDVTMYRSMIGGMLYLCASRPDIMYASSYLSRYMRSPLKQHLQEAKRVLRYVKGTLTYGIHFKRVEK PELVGFSDSDWAGSVEDKKSTSGYVFTIGSGAFCWNSSKQKTVAQSTAEAEYIAVCSAANQAIWLQRLVN EIGFKAEKGIRIFCDNKSAIAIGKNPVQHRRTKHIDIKYHFVREAQQNGKIKLEYCPGELQIADILTKPL NTTRFEVLREELGVTMKP
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Derived: Positions 66843 70913 Accession No AP002064 GenBank (rel. 124.0) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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