Repbase Reports |
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| 2001, Volume 1, Issue 1 |
| January 31, 2001 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 18 |
ATCOPIA58_I |
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Internal region of the ATCOPIA58 copia-like LTR-retrotransposon - a consensus sequence. |
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Submitted: 31-Jan-2001 |
Accepted: 31-Jan-2001 |
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Key Words: LTR-retrotransposon; COPIA superfamily; internal region; copia-like polyprotein; gag, reverse transcriptase; integrase; ribonuclease H; ATCOPIA58LTR; ATCOPIA58_I |
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Source: consensus |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Internal region of the ATCOPIA58 copia-like LTR-retrotransposon - a consensus sequence. |
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Journal: Repbase Reports 1:(1) p.18 (2001) |
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Abstract: ATCOPIA58_I is a consensus sequence of an internal region of the ATCOPIA58 copia-like endogenous retrovirus. There are 4 copies of ATCOPIA58_I present in the genome; they are 98% identical to the consensus sequence, and are flanked by ~1% divergent ATCOPIA58LTR LTRs and 5-bp target-site duplications. ATCOPIA58_I encodes the 1021-aa ATCOPIA58p copia-like polyprotein. ATCOPIA58p: MDYPKEFVAVGKAIMLEKGNYGHWKVKMRALIRGLGKEAWIATSIGWKAPVIKGEDGEDVLKTEDQWNDA EEAKATANSRALSLIFNSVNQNQFKRIQNCESAKEAWDKLAKAYEGTSSVKRSRIDMLASQFENLSMEET ENIEEFSGKISAIASEAHNLGKKYKDKKLVKKLLRCLPSRFESKRTAMGTSLDTDSIDFEEVVGMLQAYE LEITSGKGGYSKGLALAASAKKNEIQELKDTMSMKNEIQELKDTISMMAKDFSRAMRRVEKKGFGRNQGT DRYRDRSSKRDEIQCHECQGYGHIKAECPSLKRKDLKCSECKGLGHTKFDCVGSKSKPDRSCSSESESDS NDGDSEDYIKGFVSFVGIIEEKDESSDSEADGEDEDNSADEDSDIEKDVNINEEFRKLYDSWLMLSKEKV AWLEEKLKVQELTEKLKGELTAANQKNSELTQKCSVAEEKNRELSQELSDTRKKIHMLNSGTKDLDSILA AGRVGKSNFGLGYNGAGSGTKTNFVRSEAAAPTKSQTGFRSNYDAVPARRVYQNHDHYHSRRTVTGYECY YCGRHGHIQRYCYRYAARLNKLKRQGKLYPYQGRTSKMYVRREDLYCHVAYTSIEEGIKKPWYFDSGASR HMTGSQSNLENYTSVKESKVTFGGGDKGKIKGKGDLTKAEKPQLTNVYFVEGLTANLISVSQLCDEGLTV SFNSVKCWATNEKNQNTLTGVRTGNNCYMWEEPKECLRAEKEDPVVWHQRLGHMNARSMSEIVSKEMVRG VQELKHIEKIVYDAYNQGKQIRVQHKRVVGVVERKNQTFQEMARAMIHGHGVPEKFWTEAISTACYVINH VYVRIGGTFDKLVKAFVKTMTTEFRLSMVGELKYFLGLQINQIDEGIAISQSTYAQNLVKRFDMCSSNPV ETPMSTTNLCSCCTKILWMKHMGLDYGMSFSDPLLVKCDNESAIAISKNPVQHSITKHIAIRHHFVRELV EEKQITVEHVPTEIQLADIFTKPLDLNMFVNLQKSLGIGEV Presumably, ATCOPIA58 was a semi-autonomous endogenous retrovirus. It is ~85% identical to ENDOVIR1.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References:
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